PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004494832.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family bHLH
Protein Properties Length: 579aa    MW: 64582.9 Da    PI: 6.6863
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004494832.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.64.7e-13408454455
                     HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                     +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI++Lq
  XP_004494832.1 408 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAIAYINELQ 454
                     799***********************66......******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.9E-5556248IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474591.22E-17403464IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.047404453IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.61E-14407457No hitNo description
Gene3DG3DSA:4.10.280.101.3E-16408463IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-10408454IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-16410459IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 579 aa     Download sequence    Send to blast
MKVKEVASTL RFLLLNEEDK SMVGAVLGSQ AFDFLTTNCL SNEPVLLSIA TSDDSLQNKL  60
SDLVENPNYS TNFNWNYAIF WQLSRSKSGE IVLGWGDGCC REPNEEEKRG GVGNNSNLSM  120
EEEEGMKQSL RKRVLQKLHT VFGGSDEDEE NYAFGLDRVT DTEMFFLASM YFSFPKGYGG  180
PGKCFASGKY LWLKKSDISD YCVRSFLAKS AGIQTVVLVP TDFGVVELGS VRMVPESFDL  240
LNTVKSLFPI STSLQSSLYP SRVMHEGRVH ESGVSNGVLV PKVVVNVNNG RTHFREKLAF  300
RKMDNSINFP SGRNGFHDSS WRLNQGQPEI FTPNGVRKDF RLNQPQREVQ MQIDFSGANS  360
RPSVRPVNAE LELTVDVEAS VKEDQASDER RPRKRGRKPA NGRDEPLNHV EAERQRREKL  420
NQRFYALRAV VPNISKMDKA SLLGDAIAYI NELQAKLGIM ESERVTNGIS PLKDGSILEA  480
NSRSENRHQQ DVVIQALQDE VIVKVSCPLD IHPVSKVIET FKEAQISVVE SKLAAANDTI  540
HHTFVIKSQG SEQLTKDKLI AAFSKESNAS QIQTLSSVG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A6e-28522485192Transcription factor MYC3
4rqw_B6e-28522485192Transcription factor MYC3
4rs9_A6e-28522485192Transcription factor MYC3
4yz6_A6e-28522485192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1389397RRPRKRGRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00100PBMTransfer from AT1G01260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004494832.10.0PREDICTED: transcription factor bHLH13-like
SwissprotQ9LNJ51e-173BH013_ARATH; Transcription factor bHLH13
TrEMBLA0A072U4Q40.0A0A072U4Q4_MEDTR; ABA-inducible bHLH-type transcription factor
STRINGGLYMA19G44570.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54483254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.31e-173bHLH family protein